I haven't posted in updates in while so I figured I could at least hop back on here and let you guys know what happened and whats going on now.
First of all it was the plate valves! But due to an error with us putting them in the wrong way (at least we think) we blew the pistons. So we replaced the plate valves and the pistons, and then put the oil we tried saving back in it. Still wouldnt run. We had water in our oil, so after replacing the oil it still wouldn't run. We opened it back up, didn't see anything wrong with it so we said, screw it we are tired of working on it so we took it to the local kubota shop. Sit there for 2 weeks before they got to it. The mechanic said he opened it up and it all looked good, put it back together and then drained it again and put new oil in it. Said it ran just fine. So we paid $400 to here that but the good news is she is RUNNING and has been for a few weeks now. Cost me about $1500 after it was all said and done but in the end it was worth it! Please keep in mind I kept having to buy oil, etc.. so there was a bit of wasted money into it but it is running perfectly. Just put 4 new tires and 2 new rims on it. IF anyone else has this issue, I hope this helps you. Check plate valves!
P.S: Mechanic said it was most likely vapor locked.
Hope I could help someone and again thanks for all your help guys! It was awesome and allowed us to track down the issue! Keep being awesome everyone! I would also like to thank everyone for introducing me to Messicks! Saved me a ton of money instead of going to my local shop to buy parts! IT was a big help!